Skipfish vs Lynis: Which Linux Security Auditor tool is Best in 2025?

Skipfish is an open-source web application security reconnaissance tool pre-installed in Kali Linux, designed for automated penetration testing and vulnerability scanning. Developed by Google and maintained on GitHub, it performs recursive crawls and dictionary-based probes to create an interactive sitemap of a target website, annotating it with results from non-disruptive security checks. With a lightweight 559 KB footprint, Skipfish achieves high performance (500+ requests/second on internet targets, 2000+ on LAN), detecting vulnerabilities like XSS, SQL injection, and directory traversal in CMS platforms like WordPress and Joomla. Its 15+ modules, including metagoofil and wananga, support comprehensive scans, while features like form authentication, custom headers, and heuristic wordlist generation enhance flexibility. Skipfish generates detailed HTML reports for professional security assessments, making it ideal for ethical hackers, penetration testers, and webmasters.

Lynis, developed by CISOfy, is an open-source security auditing and hardening tool for Linux and Unix-based systems included in Kali Linux. It performs comprehensive system scans to identify vulnerabilities, misconfigurations, and compliance issues, generating detailed reports for professional auditors and system administrators. Lynis supports automated audits, forensic analysis, and penetration testing modes, offering over 300 tests for file permissions, software updates, and network security. It integrates with compliance frameworks like PCI DSS and HIPAA.